For the fan-translated English version of comics (not novels since novels are hosted in this wiki), please search on mangadex.org.
Mainline
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Recovery
Character comic series
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Houkai Gakuen EX - Sakura Arc
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Sin Mal
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Houraiji Kyuusyou
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Kyuusyou Special Comic: Track of Light
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Yssring Leavtruth - Origin of Science
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Mushoku Kika - The Moment of Shining Light
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Sirin
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Shigure Kira - Gradually Shining Star
Legacy series
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Fu Hua's New story - Eastbound
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Apocalypse - War
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Apocalypse - Pestilence
Others
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Houkai Gakuen 2 x Bloodline: The Girl Who Transcended Realms
Houkai 3rd - The Third Houkai War
The story of Houkai 3rd was set in Retrospective chapter of Houkai Gakuen 2.
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Houkai Gakuen EX (side) stories
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Top Secret Documents
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Escape from Changkong City
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Violet Sea Story
Novel
Warning: May contain heavy spoiler, please progress the ingame story first before reading novels
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Kevin Light Novel
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Houkai: Servant Era
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Fire Moth DLC
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Create the World